genepattern-notebook

• Bug fixes
• Usability fixes
• UI Builder widgets will add themselves to the Tool Manager

• Improvements to the UI Builder
• Support for ipywidgets 7
• Bug fixes

• Beta release of the UI Builder
• Package restructuring
• Bug fixes

• Parameter group support
• Call Widget bug fixes

• Bug fix release for low-numbered LSIDs

• New "Send From Upstream File" widget
• Bug fixes

• Support for signing into multiple GenePattern servers at the same time
• Integration with NBTools
• Refactored code to Jupyter's latest standards
• Better Python variable support
• Removed deprecated #!AUTOEXEC flags

• Style updated for Jupyter Notebook 0.4.3
• Reload Task Form renamed to Duplicate Analysis
• GenePattern link added to help menu
• Job launching now more in line with Jupyter standards
• GenePattern Broad server removed from default list
• Revision of widget buttons
• Bug fixes

• Important bug fix

• Updates for genepattern-python 1.2.2 dependency
• Added "Send to DataFrame" option for ODF files
• Added beta version of the new CallWidget
• Added support Python variable input in GenePattern widgets
• Bug fixes

• Replaced "view code" with "send to code" functionality
• Added "Send to DataFrame" option for GCT files
• Updated loading of client-side resources to new Jupyter standard
• Bug fixes

• Bug fixes
• Pop out button on JavaScript visualizers
• Embed latest version of modules by default

• Added ability to specify default GenePattern server
• Fix for markdown #!AUTOEXEC bug
• Updated GenePattern public server URL to HTTPS

• Minor bug fixes

• Updated URL of GenePattern public server to HTTPS

• An early version of the GenePattern Notebook Repository is now available at http://notebook.genepattern.org. This site allows the user to create their own GenePattern notebooks and provides a variety of example notebooks demonstrating GenePattern Notebook's functionality.
• A visual (WYSIWYG) markdown editor may now be installed along with the GenePattern Notebook extension. This editor allows a user to produce visually appealing HTML/markdown without having to write a line of code.
• Switching a cell to the GenePattern cell type will now first warn the user if the cell has any content that may be lost.
• Fixed a couple bugs involving the handling of older or uninstalled modules.

• The GenePattern Notebook extension has been updated to support Jupyter 4.2 / ipywidgets 5.0.
• As of this release users no longer need to include “%reload_ext genepattern” at the top of their notebooks to load the GenePattern Notebook extension.
• The GenePattern Notebook extension is now available through both the PyPI (PIP) and Anaconda (conda) package managers.
• Fixed a minor bug involving clearing uploaded files from a parameter.

• Fix to output files sometimes appearing on same line
• Removed unnecessary GP cell warning
• Download option added to output files
• Jobs tagged as coming from the GP Notebook client
• Updated JupyterHub theme
• Added proofs of concept for new widgets

Fix for issue with JavaScript-based visualizers

• Bug fixes