geNomad: Identification of mobile genetic elements
OTHER License
NOTE: see new version at https://github.com/daler/gffutils.
Code for design of diagnostic PCR primers, and metabarcoding markers.
Quickly get the taxonomy of a genome
Improvement of metagenome-assembled genomes
Miscellaneous tools for genomics
Rapid determination of appropriate reference genomes.
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Targeted Detection and Reconstruction of Plasmids
Unified Human Gut Virome Catalog
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
A toolbox for improving metagenome-assembled genomes.
Biological sequence analysis for the modern age.
Community-curated list of software packages and data resources for single-cell, including RNA-seq...
Consensus sequences for each Pango lineage