GFF and GTF file manipulation and interconversion
MIT License
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Published by daler 6 months ago
v0.13
Miscellaneous tools for genomics
Rapid determination of appropriate reference genomes.
Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing
genes and genomes at your fingertips
Namespace encoding hierarchical relationships between proteins, protein families, and protein com...
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
Add biological annotations to variants in a given VCF file.
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Open source code for AlphaFold.
NOTE: see new version at https://github.com/daler/gffutils.
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
Python library for simple HEC-DSS functions
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software