GooseEYE

What's Changed

• Optimised strides: dealing with edge cases by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/95
• BREAKING CHANGE Adding labels_centers/center, changing center_of_mass, deprecating pos2img by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/96
• Detect sequence of clusters by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/97
• Remove deprecated functions by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/98

Full Changelog: https://github.com/tdegeus/GooseEYE/compare/v0.8.1...v0.9.0

What's Changed

• Adding labels_prune by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/93

Full Changelog: https://github.com/tdegeus/GooseEYE/compare/v0.8.0...v0.8.1

What's Changed

• Adding tip to docs by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/86
• General maintenance by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/87
• Moving tests to Python by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/88
• Overhaul cluster algorithm (3d extension needed) by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/89
• Cluster: implementation optimisation by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/91
• Fixing compiler warning by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/90

Full Changelog: https://github.com/tdegeus/GooseEYE/compare/v0.7.1...v0.8.0

Full Changelog: https://github.com/tdegeus/GooseEYE/compare/v0.7.0...v0.7.1

What's Changed

• Various minor upgrades by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/80
• Adding structure factor by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/81
• pre-commit autoupdate by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/82

Full Changelog: https://github.com/tdegeus/GooseEYE/compare/v0.6.3...v0.7.0

What's Changed

• Adding pre-commit by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/75
• Using NumPy arrays in Python API by @tdegeus in https://github.com/tdegeus/GooseEYE/pull/77

Full Changelog: https://github.com/tdegeus/GooseEYE/compare/v0.6.2...v0.6.3

• Using scikit-build, doxygen
• Renaming "test" -> "tests"
• [Python] Fixing setup dependencies

• General code-style update (#68)

• Templating all functions (#66)

• [GooseEYE::detail] Deprecating unused functions

• Adding historical tests (#64)

  • Minor code-style updates
  • Separating seed to be manual -> generate the same result on each run unless the seed is set.
  • Adding GooseEYE::random::random and GooseEYE::random::normal to help with reproducible results.
  • Saving/comparing against earlier run examples.
  • Adding numerical tests to check against previous versions
  • [CI] Not all platforms run all examples to save time.

• Switching to templates for 'clusters' API (#63)

• Generalizing "pad" (#62)

• Adding "center_of_mass" and "pos2img" (#61)

• Code-simplification (#57)

  • Applying pep8-like style, added clang-format style-file.
  • Simplifying implementation: using xt::xtensor<T,3> and atleast_3d internally.
  • Clarifying comments.
  • Adding tests.

• Update CMake style (#55)

Updating CMake

• Making CMake version independent.

API changes

• Updating API GooseEYE::dummy_circles:
  use xtensor instead of std::vector.

• Deprecating GOOSEEYE_DEBUG:
  Instead of GOOSEEYE_DEBUG you should hand specify both GOOSEEYE_ENABLE_ASSERT and XTENSOR_ENABLE_ASSERT or use the CMake target GooseEYE::debug.

• GooseEYE::dilate:
  Allowing variable number of iterations per cluster (#48)

• Flipping rank option in GooseEYE::Clusters::center_positions

• Adding GooseEYE::Clusters::sizes

Updating docs

• Updating formatting of examples
• Adding C++ examples
• Adding examples to docs
• Removing duplicate function section for Python

Miscellaneous

• Updating CI

• Adding collapsed correlation "W2c"

• Adding "--no-plot" option to examples
• Simplifying CI (fully switched to conda, plotting turned-off)
• Enabling appveyor
• Updating CMake
• Minor bugfix in "L" wrapper
• Updating setup.py

• Switched library to xtensor
• Some functionality not working yet
• Simplified documentation

The following functionality still have to be implemented in the new xtensor-based implementation:

• clusters.hpp: centers.
• dilate.hpp
• Ensemble_stampPoints.hpp
• Ensemble_W2c.hpp
• Ensemble_L.hpp

First Beta release, including:

• The Graphical-User-Interface (GUI), including a statically compiled Windows version. For now macOS and Linux users are expected to do their own compilation (which should be simple enough with Qt Creator).
• A completely new Python interface using pybind11