heatsequer

look at the secret life of bacteria

BSD-3-CLAUSE License

Stars

Ecosystems: Python

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Automated Multi-Locus Sequence Analysis phylogenetic tree construction software

HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq

Targeted Detection and Reconstruction of Plasmids

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing

Quickly get the taxonomy of a genome

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.

HiM library design tools

Rapid determination of appropriate reference genomes.

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

GUI for Calour functions