Metagenomic species profiling with enhanced coverage of the human gut microbiome
GPL-3.0 License
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A toolbox for improving metagenome-assembled genomes.
Code for design of diagnostic PCR primers, and metabarcoding markers.
Quickly get the taxonomy of a genome
Improvement of metagenome-assembled genomes
Miscellaneous tools for genomics
A fast Python and command-line utility for extracting simple statistics against genome positions ...
Targeted Detection and Reconstruction of Plasmids
Copy number caller for long read data including SNV utilization
Unified Human Gut Virome Catalog
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Rapid determination of appropriate reference genomes.
MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecu...