Lattice light-sheet post-processing utility.
OTHER License
Full Changelog: https://github.com/tlambert03/LLSpy/compare/0.4.9...v0.5.0
Published by tlambert03 almost 5 years ago
RLgpuImpl.cu(86) : cudaSafeCall() Runtime API error 1: invalid argument.
that would crash the entire program.add_image
API introduced in v0.2.4. (napari must be updated to ≥v0.2.4Published by tlambert03 almost 5 years ago
added alpha support for napari viewer. If napari is installed in the environment, it will be enabled as an option in the config "preview type" section. napari is in rapid development, so this should be considered experimental, and you should aim to keep napari up to date.
To install the most recent napari release:
pip install napari
To install the bleeding edge master branch on github:
pip install git+git://github.com/napari/napari.git
allow for no compression binaries to be installed, but deactivate compression checkbox if so
fix OTF filepattern searching, (otf search was missing OTFs named according to the documentation)
change behavior of "ditch partial files"... should decrease frequency of confusing error message.
(hopefully) fixed issue on OSX, where cudaDeconv could not find shared libraries.
Published by tlambert03 about 5 years ago
various changes to accommodate new settings.txt file formats from updated versions of Dan's software.
Published by tlambert03 about 5 years ago
fixes Issue #22 where MIP merging fails with different filename patterns
Published by tlambert03 about 5 years ago
fixes a bug in channel registration that caused the registered channels to be translated 0.5 pixels in XYZ relative to the target channel.
Published by tlambert03 over 5 years ago
cudaDeconv and libCudaDeconv should now be installed automatically by the conda installer
Published by tlambert03 over 5 years ago
long overdue "refresh" to improve LLSpy/cudaDeconv compatibility.
I recommend creating a new conda environment just to be safe... for example, install at a conda prompt:
conda create -n llsenv04 llspy
please note, you must use the cudaDeconv packaged in llspy_extra (in Janelia dropbox) in order for LLSpy to work. do not update cudaDeconv in your llspy environment
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lls install
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lls install
Published by tlambert03 over 6 years ago
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Published by tlambert03 almost 7 years ago
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Published by tlambert03 almost 7 years ago
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lls compress
command now has folder recursion and filtering by experiment age. useful for data server maintenance: quickly compress/freeze old data.Changed:
lls install
now accepts llspy_extra.zip file as well as llspy_extra directoryFixed:
Published by tlambert03 almost 7 years ago
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lls show
command: quickly preview LLSdir (MIPS or z-stack) from command line.Fixed:
Published by tlambert03 almost 7 years ago
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lls info
command now calculates sizeslls info
recurses to specified depthFixed:
Published by tlambert03 about 7 years ago
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Published by tlambert03 about 7 years ago
SLM pattern generator moved into seperate package: slmgen
. Multiple additions and changes to SLM Pattern generator. Please see https://github.com/tlambert03/llspy-slm for full changelog, and further development.
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lls path/to/llspy_extra
Published by tlambert03 about 7 years ago
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Published by tlambert03 about 7 years ago
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Published by tlambert03 about 7 years ago
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Published by tlambert03 about 7 years ago
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Published by tlambert03 about 7 years ago
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