Improvement of metagenome-assembled genomes
GPL-3.0 License
Rapid determination of appropriate reference genomes.
Targeted Detection and Reconstruction of Plasmids
Code for design of diagnostic PCR primers, and metabarcoding markers.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
A toolbox for improving metagenome-assembled genomes.
Unified Human Gut Virome Catalog
Community-curated list of software packages and data resources for single-cell, including RNA-seq...
MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Quickly get the taxonomy of a genome
geNomad: Identification of mobile genetic elements
Metagenomic species profiling with enhanced coverage of the human gut microbiome
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
Reference-free Binning of Metagenomics Long Reads using Coverage and Composition