MassQueryLanguage

The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry centric fashion.

MIT License

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MassQueryLanguage - Release 0.0.15 Latest Release

Published by mwang87 almost 2 years ago

MassQueryLanguage - Release 0.0.14

Published by mwang87 almost 2 years ago

What's Changed

New Contributors

Full Changelog: https://github.com/mwang87/MassQueryLanguage/compare/0.0.12...0.0.14

MassQueryLanguage - Release 0.0.12

Published by mwang87 over 2 years ago

What's Changed

New Contributors

Full Changelog: https://github.com/mwang87/MassQueryLanguage/compare/0.0.11...0.0.12

MassQueryLanguage - Release 0.0.11

Published by mwang87 almost 3 years ago

What's Changed

New Contributors

Full Changelog: https://github.com/mwang87/MassQueryLanguage/compare/0.0.10...0.0.11

MassQueryLanguage - Release 0.0.10

Published by mwang87 almost 3 years ago

Change Log

  • [Language Feature] Adding support for scan intensity max (#191) @mwang87
  • [Engine] Updating the extraction when there are UV spectra (#190) @mwang87
  • [Engine] Fixing defect when it is not ANY mass (#184) @mwang87
  • [Engine] More properly implementing the mass defect filtering (#183) @mwang87
  • [Extraction] Enabling Extraction of JSON files from GNPS Libraries (#179) @mwang87
  • [Translator] Updating Translate with OR (#178) @mwang87
  • [Translator] Updating translator feature (#176) @mwang87
  • [Workflow] Exporting JSON to be more scalable (#174) @mwang87
  • [Workflow] Recursive merge for scalability (#175) @mwang87
  • [Testing] Adding testing for brominated compounds (#182) @mwang87
MassQueryLanguage - Release 0.0.9

Published by mwang87 about 3 years ago

Change Log

  • [Workflow] Creating new Environment docs (#172) @mwang87
  • [Workflow] Increasing Scalability (#161) @mwang87
  • [Workflow] Add XMX options (#171) @mwang87
  • [Language/Engine] Negation (#173) @mwang87
  • [Language/Engine] Mass Defect Rename and Update ANY keyword (#167) @mwang87
  • [Dash] Revamp (#169) @mwang87
  • [Cluster Scheduling] Enabling Resume (#168) @mwang87
  • [Refactor] Using pyteomics natively to get the CV for the unit (#155) @mwang87
  • [ProteoSAFe] Linkout to Falcon (#154) @mwang87
MassQueryLanguage - Release 0.0.8

Published by mwang87 about 3 years ago

Change Log

  • Mobility Variables in Min/Max (#153) @mwang87
MassQueryLanguage - Release 0.0.7

Published by mwang87 about 3 years ago

Change Log

  • [Grammar/Engine] Mobility Support (#150) @mwang87
  • [Packaging] Updating the packages of massql commandline (#151) @mwang87
MassQueryLanguage - Release 0.0.6

Published by mwang87 about 3 years ago

Change Log

  • [Engine] Creating new API and docs for file loading and calling query (#146) @mwang87
  • [Testing] Integration Testing (#145) @mwang87
  • [Testing] Update Integration testing (#144) @mwang87
  • [Grammar/Engine] Enabling OR operations (#143) @mwang87
  • [Bug Fix] Adding maldi testing and early exit without nasty message (#141) @mwang87
  • [Testing] Adding Case sensitivity testing (#140) @mwang87
  • [Testing] Enhancing Testing and Bug Fix for Visualizer (#139) @mwang87
  • [Grammar] Removing Case Sensitivity for some keywords (#138) @mwang87
MassQueryLanguage - Release 0.0.5

Published by mwang87 about 3 years ago

Change Log

  • Release Drafter (#137) @mwang87
  • Package Reorganization (#136) @mwang87
  • showing visualization for parser (#132) @mwang87
  • [Top Down] Bug Fix for when no peaks are filtered (#135) @mwang87
  • Implementing Mass Defect (#133) @mwang87
  • Tolerate file format (#130) @mwang87
  • Enabling synonyms in Query language (#129) @mwang87
  • Using mzML for all plotting (#128) @mwang87
  • Extraction Bug Fix (#127) @mwang87
  • Adding top down test (#120) @mwang87
  • Internationalization (#123) @mwang87
  • Translation (#49) @mwang87
  • making sure i_norm is in output (#118) @mwang87
  • Visualization API (#115) @mwang87
  • Bug fix to 2d plots (#114) @mwang87
  • Extract efficient (#113) @mwang87
  • updating visualizer and translator for x range (#112) @mwang87
  • Enabling Language to Specify Ranges for X (#111) @mwang87
  • Updating Column Order and type (#105) @mwang87
  • ProteSAFe Runtime Trace (#103) @mwang87
  • Adding arrows in visualizer (#102) @mwang87
  • [WIP] Speed Increase for Data Loading (#100) @mwang87
  • Setting ceiling for min intensity percentage (#97) @mwang87
  • Adding visualizer for minimum intensity (#96) @mwang87
  • Fixing Visualizer Issues with hovers and displays (#93) @mwang87
  • Dash App bug fixes (#86) @mwang87
  • Histogram for MS2 peaks (#83) @mwang87
  • Implementing complex queries when variables are present (#79) @mwang87
  • Workflow Testing To prevent NextFlow Errors (#78) @mwang87
  • merge (#76) @mwang87
  • [WIP] Complex variables with formulas (#63) @mwang87
  • Advanced parse testing with reference parses (#74) @mwang87
  • merge (#65) @mwang87
  • [WIP] Adjusting tests for Formulas (#64) @mwang87
  • Peptide calculations (#62) @mwang87
  • Formula Calculations (#61) @mwang87
  • Numeric Expressions to calcualte peak m/z (#60) @mwang87
  • Summarization Data Science-y plots (#53) @mwang87
  • Adding comments into the language (#58) @mwang87
  • Fixing extraction bugs (#57) @mwang87
  • Cleaning up random indexes that might get injected (#54) @mwang87
  • Enabling merging multiple queries (#51) @mwang87
  • [WIP] English Translator (#48) @mwang87
  • All Caps transformation (#47) @mwang87
  • TIC Minimum in Language (#45) @mwang87
  • Adding Support for Charge State (#41) @mwang87
  • Supporting scan ranges (#40) @mwang87
  • Polarity (#38) @mwang87
  • Same filename fix (#29) @mwang87
  • Memory optimization for engine (#25) @mwang87
  • Visualizations for Queries (#26) @mwang87
  • Reorg Parallel (#22) @mwang87
  • Supporting Query in Nextflow (#16) @mwang87
  • MGF Export in Workflow (#10) @mwang87
  • V2 (#9) @mwang87
  • Correct variable mass (#8) @mwang87
  • Add precursor scan examples (#7) @XsirdanielX
  • Recursive query (#2) @mwang87