mergesam | Python Ecosystem Directory

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Super sensitive mutation validator, uses sam/bam and vcf

A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

Quickly calculate coverage of sequences in a .sam file while retaining breadth information

Frequently used commands in bioinformatics

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

Toml sorting library

Miscellaneous tools for genomics

A collection of useful bioinformatics scripts.

Tools for loading NCBI Biosample into an XML database and then transforming that into a SQL database

fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

A fast Python and command-line utility for extracting simple statistics against genome positions ...