Automate common sam & bam conversions
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Super sensitive mutation validator, uses sam/bam and vcf
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
Quickly calculate coverage of sequences in a .sam file while retaining breadth information
Frequently used commands in bioinformatics
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Toml sorting library
Miscellaneous tools for genomics
A collection of useful bioinformatics scripts.
Tools for loading NCBI Biosample into an XML database and then transforming that into a SQL database
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
A fast Python and command-line utility for extracting simple statistics against genome positions ...