Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
MIT License
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Improvement of metagenome-assembled genomes
genes and genomes at your fingertips
Biomedical Entity Linking Benchmark
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
Package for fetching metadata and downloading data from SRA/ENA/GEO
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) ...
Rapid determination of appropriate reference genomes.
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
A toolbox for improving metagenome-assembled genomes.
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
Open source code for AlphaFold.
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing