MetabolomicsSpectrumResolver

Geom3D

Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023

biosample-xmldb-sqldb

Tools for loading NCBI Biosample into an XML database and then transforming that into a SQL database

UHGV

Unified Human Gut Virome Catalog

ReDU-MS2-GNPS

User interface to reanalyze and explore all public data in Metabolomics Public Data

lm-human-preference-details

RLHF implementation details of OAI's 2019 codebase

find_differential_primers

Code for design of diagnostic PCR primers, and metabarcoding markers.

tBidBaxLipo

PySB model of interactions of tBid, Bax, and liposomes.

bs3

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

fuc

Frequently used commands in bioinformatics

MassQueryLanguage

The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to...

MoleculeSTM

Multi-modal Molecule Structure-text Model for Text-based Editing and Retrieval, Nat Mach Intell 2...

spectrafit

📊📈🔬 SpectraFit is a command-line and Jupyter-notebook tool for quick data-fitting based on the re...

q2_metabolomics

rich-msa

A Rich renderable for viewing Multiple Sequence Alignments in the terminal.

TanabeSugano

A python-solver for Tanabe-Sugano and energy-correlation diagrams