Scripts to run several metagenomics assembly programs
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Generate basic stats for an assembly.
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
A pipeline to run mapping, mash screen and assembly methods for pATLAS.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
A Snakefile to parallelize bwa.
Overlap assembler of paired-end DNA sequences generated by Illumina
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Processing pipeline for single-cell barcoded Tn5 assays