A NumPy port of the foldseek code for encoding protein structures to 3di.
BSD-3-CLAUSE License
Learning Protein-Ligand Affinity with Atomic Environment Vectors
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details...
A collection of useful tutorials for Protein Science
Application and Python module for average nucleotide identity analyses of microbes.
Open source code for AlphaFold.
A Python interface to gb-io, a fast GenBank parser written in Rust.
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
Physicochemical properties, indices and descriptors for amino-acid sequences.
Python implementation of 3D Zernike moments with PyTorch
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10...
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
Gaussian processes framework in python
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with...