mini3di

A NumPy port of the foldseek code for encoding protein structures to 3di.

BSD-3-CLAUSE License

Downloads

412

Stars

Committers

View Code on GitHub View on X

Ecosystems: Python

No releases found yet, please check back later.

Package Rankings

Top 35.76% on Pypi.org

Badges

Extracted from project README

Related Projects

aescore

Learning Protein-Ligand Affinity with Atomic Environment Vectors

16 Jun 2020 5

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details...

01 Dec 2020 1,563

protein-science

A collection of useful tutorials for Protein Science

31 Jan 2014 103

pyani

Application and Python module for average nucleotide identity analyses of microbes.

30 Dec 2014 193

alphafold

Open source code for AlphaFold.

17 Jun 2021 11,638

gb-io.py

A Python interface to gb-io, a fast GenBank parser written in Rust.

09 Mar 2022 12

rich-msa

A Rich renderable for viewing Multiple Sequence Alignments in the terminal.

10 May 2022 77

peptides.py

Physicochemical properties, indices and descriptors for amino-acid sequences.

20 Oct 2021 69

ZMPY3D_PT

Python implementation of 3D Zernike moments with PyTorch

25 Aug 2024 1

DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

04 Oct 2022 1,054

rgn2-replica

Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10...

08 Aug 2021 38

pyfamsa

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...

28 Jul 2022 28

GPy

Gaussian processes framework in python

28 Nov 2012 1,967

pyrodigal-gv

A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.

06 Sep 2023 14

pytrimal

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with...

01 Jun 2022 20