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napari - Nightly Build

Published by liu-ziyang almost 4 years ago

napari - 0.2.12

Published by sofroniewn over 4 years ago

Announcement: napari 0.2.12

We're happy to announce the release of napari 0.2.12!
napari is a fast, interactive, multi-dimensional image viewer for Python.
It's designed for browsing, annotating, and analyzing large multi-dimensional
images. It's built on top of Qt (for the GUI), vispy (for performant GPU-based
rendering), and the scientific Python stack (numpy, scipy).

For more information, examples, and documentation, please visit our website:
https://github.com/napari/napari

New Features

Add clickable color swatch with QColorDialog (#832)
Implement pluggy as plugin manager (#908)
Allow toggle theme from GUI (#943)
Add "Screenshot" option to File menu (#944)

Improvements

Allow 3D point selection via API (#907)
Add show param to Viewer (#961)
Make mouse drag attributes private in qt_layerlist (#974)
Rename viewer attribute on QtViewerDockWidget to qt_viewer(#975)
Allow LayerList to be initialized by passing in a list of layers (#979)
Rename object to item in list input arguments (#980)
Add layers.events.changed event (#982)

Bugfixes

Fix add points to empty layer (#933)
Fix points thumbnail (#934)
Fix 4D ellipses (#950)
Fix Points highlight bug index (Points-data6-3 test) (#972)
Fix labels colormap by updating computation of low discrepancy images (#985)
Pin jupyter-client<6.0.0 (#997)

Support

Sphinx docs restructuring (create space for dev-focused prose) (#942)
Fixes broken tutorials links (#946)
Remove 'in-depth' descriptor for tutorials (#949)
Flatten auto-generated docs repo (#954)
Fix bash codeblock in README.md (#956)
Abstract the construction of view/viewermodel (#957)
Add docstrings to qt_layerlist.py (#958)
Fix docs url (#960)
Fix docs script (#963)
Fix docs version tag (#964)
Disallow sphinx 2.4.0; bug fixed in 2.4.1 (#965)
Remove duplicated imports in setup.py (#969)
Fix viewer view_* func signature parity (#976)
Fix ability to test released distributions (#1002)
Fix recursive-include in manifest.in (#1003)

11 authors added to this release [alphabetical by first name or login]

Genevieve Buckley
Hagai Har-Gil
Juan Nunez-Iglesias
Justin Kiggins
Kevin Yamauchi
Kira Evans
Nicholas Sofroniew
Peter Boone
Talley Lambert
Tony Tung
Trevor Manz

10 reviewers added to this release [alphabetical by first name or login]

Ahmet Can Solak
Clinton Roy
Genevieve Buckley
Juan Nunez-Iglesias
Kevin Yamauchi
Kira Evans
Nicholas Sofroniew
Peter Boone
Talley Lambert
Tony Tung

napari - 0.2.11

Published by sofroniewn over 4 years ago

Announcement: napari 0.2.11

We're happy to announce the release of napari 0.2.11!
napari is a fast, interactive, multi-dimensional image viewer for Python.
It's designed for browsing, annotating, and analyzing large multi-dimensional
images. It's built on top of Qt (for the GUI), vispy (for performant GPU-based
rendering), and the scientific Python stack (numpy, scipy).

For more information, examples, and documentation, please visit our website:
https://github.com/napari/napari

Highlights

Point face color and edge color are now settable as a property in a columnar data table, mapped using a colormap (continuous values) or a color cycle (categorical values). See this example for syntax details.
Python 3.8 is now supported.

Improvements

Represent color as Nx4 array in Points (#782)
Qt/Vispy connection & lambda refactor (#859)
Improve slider step precision based on data range (#884)
Allow Points display properties to be set by point properties (#895)
Refactor add_* methods (#897)
Add _add_layer_data method and tests (#909)

Bugfixes

Fix clim popup position in floating widgets (#869)
Fix points selection (#902)
Move benchmarks under napari directory but not distributed (#913)
Patch py3.8 on windows (#915)
Fix nD Shapes.to_labels (#920)
Fix singleton dims (#923)

Support

Add PyQt5 tests to Linux and OSX CI (#867)
Change autodevdoc script to use new git reference (#876)
Fix invalid instructions in setup.py (#877)
Bump tests to python 3.8, general tests fix (#878)
Clean up setup.py (#880)
Fix osx py3.6 tests (#916)
Add Python 3.8 to PyPI tags (#917)
Relocate existing tests for appropriate discoverability. (#918)
Import scipy stats to prevent strange bug in tests (#927)

7 authors added to this release [alphabetical by first name or login]

Hagai Har-Gil
Kevin Yamauchi
Kira Evans
Nicholas Sofroniew
Reece Dunham
Talley Lambert
Tony Tung

8 reviewers added to this release [alphabetical by first name or login]

Hagai Har-Gil
Juan Nunez-Iglesias
Kevin Yamauchi
Kira Evans
Nicholas Sofroniew
Reece Dunham
Talley Lambert
Tony Tung

napari - 0.2.10

Published by sofroniewn almost 5 years ago

Announcement: napari 0.2.10

We're happy to announce the release of napari 0.2.10!
napari is a fast, interactive, multi-dimensional image viewer for Python.
It's designed for browsing, annotating, and analyzing large multi-dimensional
images. It's built on top of Qt (for the GUI), vispy (for performant GPU-based
rendering), and the scientific Python stack (numpy, scipy).

This is a bugfix release to address issues that snuck through in 0.2.9.

For more information, examples, and documentation, please visit our website:
https://github.com/napari/napari

Bugfixes

remove calls to QPoint.toTuple which is invalid in PyQt5 (#866)
fix aspect ratio press (#871)
fix None label (#872)
drop zarr and numcodecs dependency (#873)

2 authors added to this release [alphabetical by first name or login]

Kira Evans
Nicholas Sofroniew

2 reviewers added to this release [alphabetical by first name or login]

Juan Nunez-Iglesias
Talley Lambert

napari - 0.2.9

Published by sofroniewn almost 5 years ago

Announcement: napari 0.2.9

We're happy to announce the release of napari 0.2.9!
napari is a fast, interactive, multi-dimensional image viewer for Python.
It's designed for browsing, annotating, and analyzing large multi-dimensional
images. It's built on top of Qt (for the GUI), vispy (for performant GPU-based
rendering), and the scientific Python stack (numpy, scipy).

For more information, examples, and documentation, please visit our website:
https://github.com/napari/napari

Highlights

better support for surface timeseries (#831)
contrast limits slider popup on right click (#837)
better isosurface rendering with colormaps (#840)
attenuated MIP mode for better 3D rendering (#846)

New Features

convert layer properties to dictionary (#686)
better support for surface timeseries (#831)
make contrast_limits_range public and climSlider popup on right click (#837)
attenuated MIP mode for better 3D rendering (#846)

Improvements

bump numpydoc dependency to 0_9_2 for faster startup (#830)
better isosurface rendering with colormaps (#840)
add nearest interpolation mode to volume rendering for better labels support (#841)
refactor RangeSlider to accept data range and values. (#844)
in bindings logic, check if generator, not generator function (#853)

Bugfixes

fix fullscreen crash for test_viewer (#849)
fix RangeSlider.rangeChange emit type bug (#856)

API Changes

edge_color and face_color now refer to colors of all points and shapes
in layer, current_edge_color and current_face_color now refer to the
colors currently selected in the GUI (#686)

5 authors added to this release [alphabetical by first name or login]

Juan Nunez-Iglesias
Kira Evans
Nicholas Sofroniew
Talley Lambert
Tony Tung

4 reviewers added to this release [alphabetical by first name or login]

Juan Nunez-Iglesias
Nicholas Sofroniew
Talley Lambert
Tony Tung

napari - 0.2.8

Published by sofroniewn almost 5 years ago

Announcement: napari 0.2.8

We're happy to announce the release of napari 0.2.8!
napari is a fast, interactive, multi-dimensional image viewer for Python.
It's designed for browsing, annotating, and analyzing large multi-dimensional
images. It's built on top of Qt (for the GUI), vispy (for performant GPU-based
rendering), and the scientific Python stack (numpy, scipy).

For more information, examples, and documentation, please visit our website:
https://github.com/napari/napari

New Features

Add napari --info and --citation to CLI (#814)

Bugfixes

Fix broken links in CODE_OF_CONDUCT.md (#815)
Modify visibility changed slot to only update if object visible (#822)
Fix broken link in CONTRIBUTING.md (#824)
Make compatible with numpy 1.18 (#827)

5 authors added to this release [alphabetical by first name or login]

Genevieve Buckley
Nicholas Sofroniew
Russell Anderson
Talley Lambert
Tony Tung

3 reviewers added to this release [alphabetical by first name or login]

Juan Nunez-Iglesias
Nicholas Sofroniew
Talley Lambert

napari - 0.2.7

Published by sofroniewn almost 5 years ago

Announcement: napari 0.2.7

We're happy to announce the release of napari 0.2.7!
napari is a fast, interactive, multi-dimensional image viewer for Python.
It's designed for browsing, annotating, and analyzing large multi-dimensional
images. It's built on top of Qt (for the GUI), vispy (for performant GPU-based
rendering), and the scientific Python stack (numpy, scipy).

For more information, examples, and documentation, please visit our website:
https://github.com/napari/napari

Highlights

Play button for animating axes now in the GUI
Threshold slider for much improved isosurface rendering
Dockable widgets
Slice information on sliders
Dramatically improved performance with many invisible layers
Adopted a governance model with a mission and values statement
Added a new core dev guide

New Features

Add governance model, mission and values, core dev guide (#655)

Improvements

Iso-surface threshold slider (#712)
Add play button to GUI (#726)
Make layers list dockable (#727)
Add Zenodo badge to documentation (#743)
Add a dock icon (#744)
Show splash screen for cli launch (#745)
Add benchmarks for setting .data in Image layers (#747)
Refactor layer tests to be more parametrized (#723)
Support opening labels layers via directly from path (#748)
Simplify keybindings info display (#749)
Clean up info box (#750)
Display slice info on right of slider (#759)
Block refresh for invisible layers (#776)
About copy button to info display box (#798)
Add blocked_signals context manager (#797)
Better selected menu header background color (#813)

Bugfixes

Fix StringEnum setting and errors (#757)
scale argument now accepts array-like input (#765)
fix set_fps type to float (#767)
Add shutdown method to QtViewer that closes all resources (#769)
Change language around windows support in readme (#779)
Revert #784 console shutdown conditionals (#796)
Fix window raise & inactive menubar conflict (#795)
Change documentation on qt.py folder location (#783)
Updating qt_console with better resource management (#784)
Respect vispy max texture limits (#788)
Fix (minor) deprecation warnings (#800)
Fix FPS spin box on Qt < 5.12 (#803)
Bumpy vispy dependency to 0.6.4 (#807)
Set threshold for codecov failure (#806)
Rename util to utils in MANIFEST.in (#811)
Add requirements/release.txt with release dependencies (#809)

API Changes

Rename util to utils across repo (#808)
Move Labels utility functions to labels_util.py (#770)
Move Image layer utility functions to image_utils.py (#775)
Move Layer utility functions to /napari/layers/layer_utils.py (#778)
Refactor util.misc (#781)
Drop ndim keyword from labels layer (#773)

7 authors added to this release [alphabetical by first name or login]

Genevieve Buckley
Kevin Yamauchi
Kira Evans
Nicholas Sofroniew
Peter Boone
Shannon Axelrod
Talley Lambert

7 reviewers added to this release [alphabetical by first name or login]

Ahmet Can Solak
Juan Nunez-Iglesias
Kevin Yamauchi
Kira Evans
Nicholas Sofroniew
Shannon Axelrod
Talley Lambert

napari - 0.2.6

Published by sofroniewn almost 5 years ago

Announcement: napari 0.2.6

We're happy to announce the release of napari v0.2.6!
napari is a fast, interactive, multi-dimensional image viewer for Python.
It's designed for browsing, annotating, and analyzing large multi-dimensional
images. It's built on top of Qt (for the GUI), vispy (for performant GPU-base
rendering), and the scientific Python stack (numpy, scipy).

For more information, examples, and documentation, please visit our website:
https://github.com/napari/napari