Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, in Pytorch
MIT License
Implementation of DecompOpt - Controllable and Decomposed Diffusion Models for Structure-based Mo...
Implementation of Invariant Point Attention, used for coordinate refinement in the structure modu...
Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined ...
A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein d...
Implementation of the algorithm detailed in paper "Evolutionary design of molecules based on deep...
Implementation of the specific Transformer architecture from PaLM - Scaling Language Modeling wit...
The Incredible PyTorch: a curated list of tutorials, papers, projects, communities and more relat...
Implementation of a framework for Gamengen in Pytorch
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
Implementation of ProteinBERT in Pytorch
Implementation of Alphafold 3 in Pytorch
Implementation of gMLP, an all-MLP replacement for Transformers, in Pytorch
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein...
Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
Implementation of Graph Transformer in Pytorch, for potential use in replicating Alphafold2