pango-sequences | Python Ecosystem Directory

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Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Automated Multi-Locus Sequence Analysis phylogenetic tree construction software

Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing

A fast Python and command-line utility for extracting simple statistics against genome positions ...

SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing

Utility to alias and dealias pango lineages

Rapid determination of appropriate reference genomes.

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

genes and genomes at your fingertips

Open source code for AlphaFold.

Biological sequence analysis for the modern age.

Prediction fitness of leaves on a genealogical tree

Contains dates on which each Pango lineage was designated

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

Community-curated list of software packages and data resources for single-cell, including RNA-seq...