Quickly calculate coverage of sequences in a .sam file while retaining breadth information
Copy number caller for long read data including SNV utilization
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
combining p-values using modified stouffer-liptak for spatially correlated results (probes)
Targeted Detection and Reconstruction of Plasmids
Converts lcov output to Cobertura-compatible XML for CI
Miscellaneous tools for genomics
Open Source Architecture Code Analyzer
A fast Python and command-line utility for extracting simple statistics against genome positions ...
Frequently used commands in bioinformatics
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids