Gene tree correction using species tree and NJ
GPL-3.0 License
Rapid determination of appropriate reference genomes.
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) ...
Improvement of metagenome-assembled genomes
Code for design of diagnostic PCR primers, and metabarcoding markers.
🐞 Convert NCBI taxonomy dump into lineages
A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set ...
Application and Python module for average nucleotide identity analyses of microbes.
Quickly get the taxonomy of a genome
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Effective selection of population size projection for construction of the site frequency spectrum...
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Community-curated list of software packages and data resources for single-cell, including RNA-seq...
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association bet...
Prediction fitness of leaves on a genealogical tree
A toolbox for improving metagenome-assembled genomes.