Implementation of ProteinBERT in Pytorch
MIT License
Gibbs sampling for generating protein sequences
Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10...
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein...
Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedic...
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
keras implement of transformers for humans
Implementation of E(n)-Transformer, which incorporates attention mechanisms into Welling's E(n)-E...
GLM (General Language Model)
Implementation of RETRO, Deepmind's Retrieval based Attention net, in Pytorch
A flexible package for multimodal-deep-learning to combine tabular data with text and images usin...
Implementation of Invariant Point Attention, used for coordinate refinement in the structure modu...
Code for paper Fine-tune BERT for Extractive Summarization
Implementation of Graph Transformer in Pytorch, for potential use in replicating Alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details...
Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax