Application and Python module for average nucleotide identity analyses of microbes.
MIT License
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Physicochemical properties, indices and descriptors for amino-acid sequences.
Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Ka...
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now ...
genes and genomes at your fingertips
Gaussian processes framework in python
A python-based environment for the automated compilation of books from markdown.
Rapid determination of appropriate reference genomes.
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) ...
16S rRNA database
Open source code for AlphaFold.
QM-based enzyme model generation and validation.
Biomedical Entity Linking Benchmark
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids