A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
GPL-3.0 License
This is the repository for the flypi project
A toolbox for comparative genomics.
Unified Human Gut Virome Catalog
genes and genomes at your fingertips
A toolbox for improving metagenome-assembled genomes.
A NumPy port of the foldseek code for encoding protein structures to 3di.
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with...
Application and Python module for average nucleotide identity analyses of microbes.
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now ...
a lightweight db framework for exploring genetic variation.
A Python interface to gb-io, a fast GenBank parser written in Rust.
Code for design of diagnostic PCR primers, and metabarcoding markers.
Physicochemical properties, indices and descriptors for amino-acid sequences.
Gaussian processes framework in python