RDE-PPI

TUPE

Transformer with Untied Positional Encoding (TUPE). Code of paper "Rethinking Positional Encoding...

enformer-pytorch

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

Geom3D

Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023

rgn2-replica

Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10...

ddpm-proteins

A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein d...

diffab

✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for P...

OmniBenchmark

[ECCV2022] New benchmark for evaluating pre-trained model; New supervised contrastive learning fr...

ProteinDT

tf-bind-transformer

A repository with exploration into using transformers to predict DNA ↔ transcription factor binding

alphafold3-pytorch

Implementation of Alphafold 3 in Pytorch

3D-Generative-SBDD

💊 A 3D Generative Model for Structure-Based Drug Design (NeurIPS 2021)

ChemProjector

Projecting Molecules into Synthesizable Chemical Spaces (ICML 2024)

ClynMut

To be a next-generation DL-based phenotype prediction from genome mutations.

MoleculeSTM

Multi-modal Molecule Structure-text Model for Text-based Editing and Retrieval, Nat Mach Intell 2...

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details...