A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
MIT License
A NumPy port of the foldseek code for encoding protein structures to 3di.
Aggregate results from bioinformatics analyses across many samples into a single report.
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Application and Python module for average nucleotide identity analyses of microbes.
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
Physicochemical properties, indices and descriptors for amino-acid sequences.
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
A module to compute textual lexical richness (aka lexical diversity).
Gaussian processes framework in python
Code for design of diagnostic PCR primers, and metabarcoding markers.
A Python interface to gb-io, a fast GenBank parser written in Rust.
Open source code for AlphaFold.
genes and genomes at your fingertips
This is the repository for the flypi project
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with...