[WIP] Signal peptide prediction based on the SignalP 5.0 paper
Implementation of ProteinBERT in Pytorch
Gibbs sampling for generating protein sequences
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
This package contains deep learning models and related scripts for RoseTTAFold
The full training script for Enformer - Tensorflow Sonnet
splearn: package for signal processing and machine learning with Python. Contains tutorials on un...
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein...
DLPacker
Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small...
Implementation of Invariant Point Attention, used for coordinate refinement in the structure modu...
Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined ...
In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies
To be a next-generation DL-based phenotype prediction from genome mutations.
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details...
Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10...
