SlicerParcellation

3DUnetCNN

Pytorch 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

image-segmentation-keras

Implementation of Segnet, FCN, UNet , PSPNet and other models in Keras.

PanoHead

Code Repository for CVPR 2023 Paper "PanoHead: Geometry-Aware 3D Full-Head Synthesis in 360 degree"

medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such...

Blender-DEXTR

Use Deep Extreme Cut (DEXTR) to mask image sequences with motion tracking data from Blender

NestedFormer

NestedFormer: Nested Modality-Aware Transformer for Brain Tumor Segmentation (MICCAI 2022)

DeepBrainSeg

Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks

csg_mri_pipelines

MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness

SlicerTorchIO

3D Slicer module for TorchIO.

vesseg

Brain vessel segmentation using 3D convolutional neural networks

BraTS_2021

SlicerEPISURG

3D Slicer module to visualize the EPISURG dataset and segment postoperative brain resection cavit...

MRISkullStripping

Developing a UNet3D model for accurate MRI skull stripping using the Calgary Campinas 359 dataset...

resseg-ijcars

Code, data and model for Pérez-García et al. 2021, "A self-supervised learning strategy for posto...

resector

Algorithm to simulate resection surgery on brain MRI scans. Published in MICCAI 2020, extended in...