SNARE-seq

Code to process raw SNARE-seq ATAC reads

MIT License

Stars
7
View Code on GitHub View on X
Ecosystems: Python

Statistics for this project are still being loaded, please check back later.

Related Projects
riboraptor

Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smi...

06 Mar 2017 13
fastq-dl

Download FASTQ files from SRA or ENA repositories.

10 Oct 2019 269
covid19

SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing

24 Jan 2021 6
sinto

Tools for single-cell data processing

28 Mar 2019 117
snakefiles

Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).

24 Nov 2015 87
ngs-tools

Miscellaneous tools for genomics

23 Sep 2016 7
snakemake-parallel-bwa

A Snakefile to parallelize bwa.

11 Apr 2013 13
encode-dataframe

Convert UCSC's ENCODE metadata into pandas DataFrames

22 Aug 2014 9
metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

05 Apr 2012 87
basc

Processing pipeline for single-cell barcoded Tn5 assays

28 Sep 2021 0
miseq-16S-pipeline

HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq

29 Jul 2015 11
pATLASflow

A pipeline to run mapping, mash screen and assembly methods for pATLAS.

30 Jan 2018 2
singlecell-ige

Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)

27 Aug 2018 8
bs3

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

17 Aug 2016 26