the sponge microbiome database
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Visualization for Sequential Neural Networks with Attention
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.
Package for fetching metadata and downloading data from SRA/ENA/GEO
Rapid determination of appropriate reference genomes.
genes and genomes at your fingertips
This repo contains code that is relevant for the analysis (Mapping, BAM qc, Variant Calling, Filt...
🦠A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outb...
Python package wrapping some of the encode project APIs.
Access to Biological Web Services from Python.
Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smi...
website interfacing the dbbact rest api server microbiome knowledge base
A simple tool to determine the genome size of an organism
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing