Targeted Detection and Reconstruction of Plasmids
GPL-3.0 License
A fast Python and command-line utility for extracting simple statistics against genome positions ...
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Generate basic stats for an assembly.
A pipeline to run mapping, mash screen and assembly methods for pATLAS.
genes and genomes at your fingertips
NOTE: see new version at https://github.com/daler/gffutils.
Code for running RFdiffusion
Biological sequence analysis for the modern age.
Quickly get the taxonomy of a genome
Pathmatcher - Manipulate file paths trees like simple text using powerful regular expressions!
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Rapid determination of appropriate reference genomes.
look at the secret life of bacteria