Python utilities for building integrated views of TCGA data.
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Rapid determination of appropriate reference genomes.
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Exploring conversation of Consolidated CDA to JSON for web apps
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.
A convolutional neural network implementation for predicting gene expression from H&E-stained his...
A series of Python Jupyter notebooks that help you better understand "The Elements of Statistical...
A python wrapper for Enrichr APIs
Targeted Detection and Reconstruction of Plasmids
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
Python package wrapping some of the encode project APIs.
Effective selection of population size projection for construction of the site frequency spectrum...
look at the secret life of bacteria
Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing