Python package to quickly download genomes from the UCSC.
MIT License
genes and genomes at your fingertips
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
🐞 Convert NCBI taxonomy dump into lineages
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
Python package wrapping some of the encode project APIs.
Convert UCSC's ENCODE metadata into pandas DataFrames
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Rapid determination of appropriate reference genomes.
Unified Human Gut Virome Catalog
Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.
A simple tool to determine the genome size of an organism
python access to UCSC genomes database
Open source code for AlphaFold.