Unified Human Gut Virome Catalog
OTHER License
A toolbox for improving metagenome-assembled genomes.
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
Rapid determination of appropriate reference genomes.
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
Frequently used commands in bioinformatics
A Python interface to gb-io, a fast GenBank parser written in Rust.
Application and Python module for average nucleotide identity analyses of microbes.
Metagenomic species profiling with enhanced coverage of the human gut microbiome
Quickly get the taxonomy of a genome
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
Improvement of metagenome-assembled genomes
geNomad: Identification of mobile genetic elements
MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
Code for design of diagnostic PCR primers, and metabarcoding markers.