pykale
Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the ð¥PyTorch ecosystem. â Star to support our work!
MIT License
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New Features
- #348: Create stale workflow
- #356: Update CIFAR CNNTransformer example to Lightning
- #358: Add option to log messages to terminal
- #365: Update project.yml for the new project board
- #370: Support py3.10 and remove py3.7
Bug Fixes
- #372: Update IPython version from <9.0 to <8.13 to support Python 3.8
Code Improvements
Published by haipinglu about 2 years ago
Published by haipinglu about 2 years ago
New Features
- #246: Add MIDA, CoIRLS, distribution plot, and brain example
Bug Fixes
- #322: Add pre-commit dependency for black and click
- #330: Fix problems of tests for Python version 3.7, 3.8 and 3.9
Code Improvements
- #284: Update DICOM reading and image visualization
- #320: Add code scanning
- #321: Fix cardiac MRI example visualization number of columns
- #331: Update cmr example landmark visualization
Documentation Updates
- #333: Update docs and readme for 0.1.0 release
Published by haipinglu over 2 years ago
New Features
Bug Fixes
- #244: Update getting indicies with torch.where
- #254: Fix bugs for upgrading PyTroch-lightning to 1.5
- #256 & #257: Update for PyTorch 1.10 and Torchvision 0.11.1
- #286: Update ipython requirement from <8.0 to <9.0
Code Improvements
- #240: Refractor the code to save the images instead of opening them at runtime
- #271: Fix doc build, improve docstrings and MPCA pipeline fit efficiency
- #272: Update progress_bar for PyTorch Lightning & change 'target' abbreviation
- #283: "val" in variable names to "valid"
Tests
- #258: Use pyparsing 2.4.7 in test
Documentation Updates
Published by haipinglu about 3 years ago
Published by haipinglu about 3 years ago
New Features
- #196: Add Google Drive Download API
- #197: Multi domain loader and office data access
- #210: Multi-source domain adaptation SOTA
Code Improvements
- #201: No "extras", only "normal" or "dev" installs
Tests
- #178: Reduce tests for video
- #188: Create download_path directory in conftest.py
- #189: Create test_sampler.py and update doc for tests
- #200: Nightly test run
Documentation Updates
- #165: Notebook tutorial for the bindingdb_deepdta example
- #199: CMR PAH notebook example
- #207: Restructure notebook tutorial docs
- #212: Describe use of YAML
Other Changes
Published by haipinglu over 3 years ago
New Features
- #149: Add digits notebook with Binder and Colab
- #151: Add class subset selection
- #159: Add interpret module
Code Improvements
- #132: Create file download module
- #138: Change action_domain_adapter.py to video_domain_adapter.py
- #144: Move gait data to pykale/data
- #157: Add concord_index calculation into DeepDTA
Tests
- #127: Add video_access tests
- #134: Add tests for image and video CNNs
- #136: Add tests for domain adapter
- #137: Add tests for csv logger
- #139: Add tests for isonet
- #145: Add tests for video domain adapter
- #150: Add tests for gripnet
- #156: Remove empty tests and MNIST test
Documentation Updates
Published by haipinglu over 3 years ago
Important: Rename master to main.
Code Improvements
- #92: Update action domain adaptation pipeline and modules (big PR)
- #123: Merge prep_cmr with image_transform plus tests
Tests
- #104: Test attention_cnn
- #107: Do only CI test multiple python versions on Linux
- #122: Test deep_dta
Documentation Updates
Published by haipinglu over 3 years ago
Code Improvements
- #84: Auto assign to the default project
- #91: MPCA pipeline
- #93: Fix black config and rerun
- #97: Add changelog CI and update logo
Dependencies
- #82: Remove requirements in examples and update setup
Tests
- #70: Add tests for utils.print
- #80: Extend automated test matrix and rename lint
- #85: Test utils logger
- #87: Test cifar/digit_access and downgrade black
- #90: Test mpca
- #94: Update test guidelines
Documentation Updates
Published by haipinglu over 3 years ago
Added
- MPCA test
- Test data (gait)
Changed
- Organisation of files and folders
- MPCA solver to scipy SVD
Fixed
- Issues with MPCA implementation
Published by haipinglu over 3 years ago
See the summary below for the major progress since 0.1.0a1. Detailed features will be described in the first official release 0.1.0.
API-related
- Example: BindingDB_DeepDTA added
- Tests: a file structure and strategy set up
- MPCA: updated to new version more compatible to pytorch
- API refinement
Management and quality assurance
- Workflows: build documentation, build package, linting, pre-commit checks, release, and test
- Setup: three options of default, extras, and dev; conda installation removed
- Templates: issue and pull request
- Detailed
contributing guidelines
Published by haipinglu almost 4 years ago
The first release 0.1.0a1
This is our first release, which is also available at PyPI and Anaconda Cloud. This version has most of the necessary ingredients. It will help us discuss, identify and fix issues towards a beta release, to be managed via the project boards and issues.
