Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
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Prepare and document data for Nonmem - and automatically retrieve results
Introduction to epidemiological modelling using R
Prepare UK Biobank Electronic Health Record data for research
R package to perform data pre-processing for more informative bacterial GWAS
Code to reproduce results of the article: Heim, RHJ; Wright, IJ; Allen, AP; Geedicke, I and Oldel...
Fast and Easy Data Cleaning (in R)
Biomarker data set by Vermeulen et al. (2009)
Access and search medRxiv and bioRxiv preprint data
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
R package for multivariate mata handling in ecology and biogeography
Network meta-analysis of individual and aggregate data in Stan
Analysis code for the DIPP microbiome study
Technical data sets by Ruijter et al. (2013)
Dereplicate And Cherry-pick Mass Spectrometry Spectra
Code to reproduce results of the article: Heim, R. H. J., Wright, I. J., Chang, H.-C., Carnegie, ...