Randomly subsample sequencing reads or alignments
MIT License
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Published by mbhall88 6 months ago
reads
subcommandcite
command to get citation (db17612)aln
to subsample alignments (b92979a)reads
subcommand (f48d47b)Published by mbhall88 10 months ago
Published by mbhall88 over 4 years ago
Version 0.3.0 may give different results to previous versions. If so,
the differences will likely be a handful of extra reads (possibly none).
The reason for this is --coverage
is now treated as a float.
Previously we immediately round coverage down to the nearest integer. As
the number of reads to keep is based on the target total number of
bases, which is coverage * genome size. So if coverage is 10.7 and
genome size is 100, previously our target number of bases would have
been 1000, whereas now, it would be 1070.
--coverage
is now treated as a f32
instead of being convertedrust-bio
to version 0.31.0. This means rasusa
now handlesbash
to the docker image b47a8b75943098bdd845b7758cf2eab01ef5a3d8Published by mbhall88 almost 5 years ago