gatk-swe

GATK pipeline compatible with Cirrus

OTHER License

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Ecosystems: Shell

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RNA-seq pipeline automation scripts

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

A VirusSeq pipeline for processing multiple RNAseq samples: a command line approach.

Run Picard on BAM files and collate 90 metrics into one file.