nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
MIT License
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Run Picard on BAM files and collate 90 metrics into one file.
GATK pipeline compatible with Cirrus
A VirusSeq pipeline for processing multiple RNAseq samples: a command line approach.
RNA-seq pipeline automation scripts
RNA-Seq processing pipeline
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)