Apache Airavata Cerebrum, an Integrated Neuroscience Computational Framework

Introduction

Welcome to the Apache Airavata Cerebrum repository for the Integrated Neuroscience Computational Framework. This project aims to revolutionize how we understand and model the human brain by integrating cellular-level brain atlases with advanced computational tools. Our goal is to create a cohesive, open-source framework that allows for the seamless application of existing tools within a streamlined, lightweight environment.

Features

• Integration of Brain Atlases: Merging publicly available cellular-level brain atlases into a single, accessible platform.
• Comprehensive Modeling Tools: Incorporating computational tools designed for modeling the entire brain.
• Open-Source Framework: Developing a user-friendly, open-source environment for neuroscience research.
• Streamlined Environment: Ensuring a lightweight, efficient framework for both beginners and advanced users.

Try Airavata Cerebrum

Airavata Cerebrum requires python3.10+ environment. It is currently tested only in Linux operating system. We recommend create a virtual environment using conda as below:

conda create -n cerebrum python=3.10
conda activate cerebrum

Download and Install

Following command will download Airavata Cerebrum into your environment.

pip3 install git+https://github.com/apache/airavata-cerebrum.git

Check the resources/notebooks folder for examples of usage.