NOTE SeqAn3 is out and hosted in a different repository |
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We recommend using SeqAn3 for new applications. |
SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance.
The SeqAn library itself, the tests and demos are licensed under the very permissive 3-clause BSD License. The licenses for the applications themselves can be found in the LICENSE files.
Older compiler versions might work but are neither supported nor tested.
POPCNT
, SSE4
, AVX2
, AVX512
)Some official applications might have additional requirements or only work on a subset of platforms.