The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
OTHER License
SeqAn3 is the new version of the popular SeqAn template library for the analysis of biological sequences. It enables the rapid development of high-performance solutions by providing generic algorithms and data structures for:
By leveraging Modern C++ it provides unprecedented ease-of-use without sacrificing performance.
Please see the online documentation for more details.
requirement | version | comment | |
---|---|---|---|
compiler | GCC | ≥ 11 | no other compiler is currently supported! |
build system | CMake | ≥ 3.5 | optional, but recommended |
required libs | SDSL | ≥ 3.0.3 | |
optional libs | cereal | ≥ 1.3.1 | required for serialisation and CTD support |
zlib | ≥ 1.2 | required for *.gz and .bam file support |
|
bzip2 | ≥ 1.0 | required for *.bz2 file support |
We recommend that you use CMake to build your project:
Quick-Setup without CMake:
git clone --recurse-submodules https://github.com/seqan/seqan3.git
g++-11 -O3 -DNDEBUG -Wall -Wextra \
-std=c++20 \
-I /path/to/seqan3/include \
-isystem /path/to/seqan3/submodules/sdsl-lite/include \
-isystem /path/to/seqan3/submodules/cereal/include \
-DSEQAN3_HAS_ZLIB=1 -DSEQAN3_HAS_BZIP2=1 \
-lz -lbz2 -pthread \
your_file.cpp