31 bioinformatics utilities in a trenchcoat
Rapid determination of appropriate reference genomes.
genes and genomes at your fingertips
Unified Human Gut Virome Catalog
A Python interface to gb-io, a fast GenBank parser written in Rust.
Query sequence database by HMMs arranged in predefined synteny structure
Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Source code, data and documentation to demonstrate automation in NGS data analysis
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
A collection of useful bioinformatics scripts.
Metagenomic species profiling with enhanced coverage of the human gut microbiome
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
Tools for loading NCBI Biosample into an XML database and then transforming that into a SQL database