Cell-Simulation

Python simulation of a single-celled organism Peter Collingridge 2010

testCell.py This is the top-level module

• Gives an example of how to create and update cells
• Runs simulation for 48000 units of time

virtualCell.py

• Defines Solution and Cell classes
• Imports

biochemistry.py

• Contains all_metabolites list and all_reactions dictionary
• Defines Metabolite, Reaction and Protein classes

graphDrawer.py

• Takes multiple time series and plots them as an SVG