Clairvoyante

pypgx

A Python package for pharmacogenomics (PGx) research

bpnet-lite

This repository hosts a minimal version of a Python API for BPNet.

MAGpurify

Improvement of metagenome-assembled genomes

find_differential_primers

Code for design of diagnostic PCR primers, and metabarcoding markers.

enformer-pytorch

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

ProteinDT

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq...

Spectre

Copy number caller for long read data including SNV utilization

redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

IGGsearch

Metagenomic species profiling with enhanced coverage of the human gut microbiome

UHGV

Unified Human Gut Virome Catalog

MicrobeCensus

MicrobeCensus estimates the average genome size of microbial communities from metagenomic data

demuxalot

Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing

TristouNet

TristouNet: Triplet Loss for Speaker Turn Embedding

dragonnfruit

A method for analyzing scATAC-seq experiments.