a broadly applicable tool for automated gene identification and retrieval
MIT License
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
Aggregate results from bioinformatics analyses across many samples into a single report.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Open source code for AlphaFold.
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
Rapid determination of appropriate reference genomes.
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
a versatile toolkit for processing and analyzing diverse types of sequence data
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association bet...
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Streamlining phylogenomic data gathering, processing and visualization
genes and genomes at your fingertips
Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)