Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
GPL-3.0 License
A Python FASTA file Parser and Writer.
genes and genomes at your fingertips
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
A fast Python and command-line utility for extracting simple statistics against genome positions ...
Rapid determination of appropriate reference genomes.
Physicochemical properties, indices and descriptors for amino-acid sequences.
Gibbs sampling for generating protein sequences
Gaussian processes framework in python
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now ...
QM-based enzyme model generation and validation.
Application and Python module for average nucleotide identity analyses of microbes.
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Open source code for AlphaFold.
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) ...