Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
GPL-3.0 License
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Published by althonos about 2 months ago
GappedSequence
class, taking an identifier and a sequence as bytes
objects.Alignment
class, taking an iterable of GappedSequence
object.Alignment.copy
implementation.Alignment
.Aligner.align_profiles
function to align two profiles (#5).scoring-matrices
package to ~=0.2.0
.shared_ptr
in GappedSequence
and Alignment
to avoid copying data when possible.pydata-sphinx-theme
.