Query sequence database by HMMs arranged in predefined synteny structure
APACHE-2.0 License
Application and Python module for average nucleotide identity analyses of microbes.
Tools to download, parse and filter GenBank files
Pandas DataFrames for phylogenetics
Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.
Source code, data and documentation to demonstrate automation in NGS data analysis
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
Rapid determination of appropriate reference genomes.
Modeling phycospheric metabolic interactions in python
Physicochemical properties, indices and descriptors for amino-acid sequences.
Biomedical Entity Linking Benchmark
genes and genomes at your fingertips
A module to compute textual lexical richness (aka lexical diversity).
A Python interface to gb-io, a fast GenBank parser written in Rust.
A toolbox for comparative genomics.
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.