GenBankpy

Tools to download, parse and filter GenBank files

APACHE-2.0 License

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A Python tool to download and parse GenBank files

Installation

  1. Fork git repo into local machine (click on fork) and clone, or simply clone main branch with
git clone https://github.com/Robaina/GenBankpy.git
  1. CD to project directory and set conda environment if not already set:
conda env create -n genbankpy -f environment.yml
  1. Activate environment:
conda activate genbankpy

Usage

You can find a jupyter notebook with usage examples here.

Citation

If you use this software, please cite it as below:

Robaina-Estévez, S. (2022). Genbankpy: a Python tool to ddownload and parse GenBank files (Version 0.0.1)[Computer software]. https://doi.org/10.5281/zenodo.7046036.