Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
GPL-3.0 License
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
a lightweight db framework for exploring genetic variation.
Physicochemical properties, indices and descriptors for amino-acid sequences.
Code for design of diagnostic PCR primers, and metabarcoding markers.
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
A NumPy port of the foldseek code for encoding protein structures to 3di.
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
genes and genomes at your fingertips
Application and Python module for average nucleotide identity analyses of microbes.
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now ...
Streamlining phylogenomic data gathering, processing and visualization
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
Open source code for AlphaFold.
A Python interface to gb-io, a fast GenBank parser written in Rust.