Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
GPL-3.0 License
Application and Python module for average nucleotide identity analyses of microbes.
Open source code for AlphaFold.
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Code for design of diagnostic PCR primers, and metabarcoding markers.
genes and genomes at your fingertips
Streamlining phylogenomic data gathering, processing and visualization
A NumPy port of the foldseek code for encoding protein structures to 3di.
a lightweight db framework for exploring genetic variation.
A Python interface to gb-io, a fast GenBank parser written in Rust.
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now ...
Physicochemical properties, indices and descriptors for amino-acid sequences.
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.